Run parameters: SPECIES=Lycopodium; T_Start=2012; T_End=2013; Occurrences=200; Locations=200; ForceGBIF=TRUE; ForceBV=FALSE; ForcePrep=TRUE; ForceExec=TRUE Loading required package: cowplot Loading required package: ggplot2 Loading required package: ggpmisc Loading required package: ggpp Registered S3 methods overwritten by 'ggpp': method from heightDetails.titleGrob ggplot2 widthDetails.titleGrob ggplot2 Attaching package: ‘ggpp’ The following object is masked from ‘package:ggplot2’: annotate Loading required package: ggpubr Attaching package: ‘ggpubr’ The following objects are masked from ‘package:ggpp’: as_npc, as_npcx, as_npcy The following object is masked from ‘package:cowplot’: get_legend Loading required package: gridExtra Loading required package: parallel Loading required package: pbapply Loading required package: raster Loading required package: sp Loading required package: remotes Loading required package: rgbif Loading required package: rnaturalearth Loading required package: sdm sdm 1.1-8 (2021-11-11) Loading required package: sf Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE Loading required package: terra terra 1.7.65 Attaching package: ‘terra’ The following object is masked from ‘package:ggpubr’: rotate Loading required package: tidyr Attaching package: ‘tidyr’ The following object is masked from ‘package:terra’: extract The following object is masked from ‘package:raster’: extract Loading required package: usdm Loading required package: viridis Loading required package: viridisLite Loading required package: iterators This is KrigR (version 0.9.6.1). Note that as of version 0.5.0, considerable changes from the development path have been merged with the main branch leading to the deprecation of some older and outdated functionality. If you have used a version of KrigR prior to 0.5.0 before, we strongly recommend you re-familiarise yourself with the complete suite of KrigR. This message will keep showing until KrigR version 1.0.0 is achieved. Loading required package: R6 Loading required package: mmap Loading required package: dismo Loading required package: gbm Loaded gbm 2.2.2 This version of gbm is no longer under development. Consider transitioning to gbm3, https://github.com/gbm-developers/gbm3 Loading required package: tree Loading required package: mda Loading required package: class Loaded mda 0.5-5 Loading required package: mgcv Loading required package: nlme Attaching package: ‘nlme’ The following object is masked from ‘package:usdm’: Variogram The following object is masked from ‘package:raster’: getData This is mgcv 1.9-3. For overview type 'help("mgcv-package")'. Loading required package: glmnet Loading required package: Matrix Attaching package: ‘Matrix’ The following objects are masked from ‘package:tidyr’: expand, pack, unpack Loaded glmnet 4.1-8 Loading required package: earth Loading required package: Formula Loading required package: plotmo Loading required package: plotrix Attaching package: ‘plotrix’ The following object is masked from ‘package:terra’: rescale Loading required package: rJava Loading required package: RSNNS Loading required package: Rcpp Attaching package: ‘Rcpp’ The following object is masked from ‘package:mmap’: sizeof Loading required package: ranger Loading required package: randomForest randomForest 4.7-1.2 Type rfNews() to see new features/changes/bug fixes. Attaching package: ‘randomForest’ The following object is masked from ‘package:ranger’: importance The following object is masked from ‘package:gridExtra’: combine The following object is masked from ‘package:ggplot2’: margin Loading required package: rpart Loading required package: kernlab Attaching package: ‘kernlab’ The following objects are masked from ‘package:terra’: buffer, size The following objects are masked from ‘package:raster’: buffer, rotated The following object is masked from ‘package:ggplot2’: alpha numberOfCores = 9 Retrieving GBIF data Starting GBIF data retrieval ## Resolving Lycopodium at genus level ## Downloading 142677 GBIF records status: preparing status: running status: succeeded download is done, status: succeeded Download file size: 16.39 MB On disk at /src/Data/GBIF/0031568-260226173443078.zip Loading GBIF Data into R Resolving Common Data Issues Extracting species-level data into MULTIPOINT objects Retrieving environmental data Data has already been downloaded with these specifications previously. It has been loaded from the disk. If you wish to override the present data, please specify Force = TRUE Retrieving additional covariates Preparing data for SDM workflow Preparing occurrence data for SDM workflow Registering cluster for parallel processing [1] "Registering cluster" [1] "R Objects loading to cluster" [1] "R Packages loading on cluster" Figuring out Presences and Absences for each species Executing SDM workflows [1] "Registering cluster" Registering cluster for parallel processing [1] "R Objects loading to cluster" [1] "R Packages loading on cluster" Mar 12, 2026 8:55:11 AM java.util.prefs.FileSystemPreferences$1 run INFO: Created user preferences directory.